PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109780.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 288aa    MW: 31583 Da    PI: 6.9587
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17214249134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_009109780.1 214 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 249
                     *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.13470105IPR010399Tify domain
SMARTSM009791.9E-1170105IPR010399Tify domain
PfamPF062009.4E-1173104IPR010399Tify domain
PfamPF062031.5E-15138180IPR010402CCT domain
PROSITE profilePS5101713.066138180IPR010402CCT domain
PROSITE profilePS501149.222208256IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-11208261IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13211267No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15213255IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-15214249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
CDDcd002021.11E-14214261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDDDLHGNNG GMHNGGGVQD PNHSMHVQYD HHGMMDEQHA DDVMNEGLEA DIPSHLGNTS  60
DHRGEVVDRG SENGDQLTLS FQGQVYVFDR VLPEKVQAVL LLLGGREVPN TVPTNVGSPH  120
QNNRGLSGTP QRFSARHRQA SLLRFREKRK GRNFDKTIRY TVRKEVALRM QRKKGQFTSA  180
KSSNEDSASN GSDWGSGQSW ALEGTEAQKP EALCRHCGTS EKSTPMMRRG PEGPRTLCNA  240
CGLMWANKGA LRDLSKAPPP PTAQNLPANK IDESILEAEL AGDISNSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.112810.0bud| leaf| root| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109780.10.0PREDICTED: GATA transcription factor 24 isoform X2
SwissprotQ8GXL71e-158GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A398AXB50.0A0A398AXB5_BRACM; Uncharacterized protein
STRINGBra023900.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-157ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]