PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009109855.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 211aa    MW: 23626.3 Da    PI: 7.1591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009109855.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F ++  L  H++ H
  XP_009109855.1 59 FSCNYCRRKFYSSQALGGHQNAH 81
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-65687No hitNo description
PROSITE profilePS5015711.3855986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTESDDASRE LPAREGDTSL NQDLSKPESI IPVSLDLKLN DSFNDDQKGT KCQPNPRVFS  60
CNYCRRKFYS SQALGGHQNA HKRERTMAKR AVHMGRMFGH HHRPYTYTSS SLGMQAHSGL  120
LHHTLSQPQP PPHLARFHHQ GYFGNTVPLL FDYDDGSDLF WPGSFRQVVE EAEAPVVVAV  180
RESGLDLNSV AADGSVVDNN NRSKPDLTLR L
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009109855.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527370.0AK352737.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109855.11e-158PREDICTED: zinc finger protein 7-like
RefseqXP_009109856.11e-158PREDICTED: zinc finger protein 7-like
SwissprotQ392661e-125ZFP7_ARATH; Zinc finger protein 7
TrEMBLA0A078JPJ21e-157A0A078JPJ2_BRANA; BnaA08g31130D protein
TrEMBLA0A397YD781e-157A0A397YD78_BRACM; Uncharacterized protein
TrEMBLM4D3C11e-157M4D3C1_BRARP; Uncharacterized protein
STRINGBra010975.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139991725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-116zinc finger protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]