PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009109967.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 236aa MW: 26906.9 Da PI: 4.9152

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009109967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.8	5e-20	73	133	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + + +ps++++++L+++l ++ e+++ +WFqNrRa+ k+ XP_009109967.1 73 RQRWTPTPMQLQILERLFDQdTGTPSKQKIKDLTEELsqhgQIAEQNICNWFQNRRARSKR 133 89***************99************************************97 PP
2	Wus_type_Homeobox	92.7	3.3e-30	72	135	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++ + tP+k++i+++t+eL+++G+i ++N+ +WFQNr+aR+++kq XP_009109967.1 72 ARQRWTPTPMQLQILERLFDQDTGTPSKQKIKDLTEELSQHGQIAEQNICNWFQNRRARSKRKQ 135 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-15	69	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.722	69	134	IPR001356	Homeobox domain
SMART	SM00389	3.6E-14	71	138	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-16	72	136	IPR009057	Homeodomain-like
Pfam	PF00046	8.3E-18	73	133	IPR001356	Homeobox domain
CDD	cd00086	1.20E-11	73	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MMELDNQQQP NPMKVMTDEQ LETLRKQIAI YATICERLVE MHKTLTSQQD LAAGGRMGGL 60 YTDTSICQKM TARQRWTPTP MQLQILERLF DQDTGTPSKQ KIKDLTEELS QHGQIAEQNI 120 CNWFQNRRAR SKRKQHCGVG SSNNKNGEGE VETETETLNE KRKRPESLLV QTDGNNNNND 180 IGTATATSPR PEDLCFQSPE MSSDLHLLGV QSNTRDEHLV ESYNLYDHVE DYDMSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009109967.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189541	0.0	AC189541.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004A18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109967.1	1e-178	PREDICTED: WUSCHEL-related homeobox 13-like
Refseq	XP_013654249.2	1e-178	WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-116	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A397YBX7	1e-177	A0A397YBX7_BRACM; Uncharacterized protein
TrEMBL	M4D231	1e-177	M4D231_BRARP; Uncharacterized protein
STRING	Bra010531.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-108	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]