PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110055.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 254aa    MW: 29356.7 Da    PI: 5.657
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-1877130356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eql++Le+ Fe  ++++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  XP_009110055.1  77 KKRRLNMEQLKTLEKNFELGNKLDSDRKLELARALGLQPRQIAIWFQNRRARSK 130
                     456899**********************************************99 PP
2HD-ZIP_I/II120.87.2e-3976167192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eq+k+LE++Fe  +kL+++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy+aLkr++++lk+en+ L++++++L++++ 
  XP_009110055.1  76 EKKRRLNMEQLKTLEKNFELGNKLDSDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDALKRQFESLKDENDLLQTQNQKLQAQVI 167
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-1960134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-1867132IPR009057Homeodomain-like
PROSITE profilePS5007117.272132IPR001356Homeobox domain
SMARTSM003893.7E-1875136IPR001356Homeobox domain
CDDcd000861.60E-1577133No hitNo description
PfamPF000462.5E-1577130IPR001356Homeobox domain
PRINTSPR000314.5E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6112128IPR000047Helix-turn-helix motif
CDDcd146860.00781125166No hitNo description
PfamPF021832.1E-15132173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSCNNGLAFF PANFSLQNHH QEEEDHPQYL LSSCTPPQDF HGFLGKRSPM QNVEGFCNLE  60
MNGEEDFSDD GSKMGEKKRR LNMEQLKTLE KNFELGNKLD SDRKLELARA LGLQPRQIAI  120
WFQNRRARSK TKQLERDYDA LKRQFESLKD ENDLLQTQNQ KLQAQVIALK SKEPIESINL  180
NKEEGSCSNR SENISGDIRP GHPPPSPTAT TMQFFHNSSP EQRMVKEENS ISNMFCGMDD  240
QTGFWPWLDQ QHYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARSKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young leaves, in the adaxial domain of leaf primordia and the rib meristem. Expressed in the styles of flowers and siliques. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:17387478}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110055.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893850.0AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110055.10.0PREDICTED: homeobox-leucine zipper protein ATHB-23-like
SwissprotQ8LFD31e-155ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLA0A078I8L30.0A0A078I8L3_BRANA; BnaA08g20030D protein
TrEMBLM4DIH30.0M4DIH3_BRARP; Uncharacterized protein
STRINGBra016300.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-157homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]