PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110135.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 302aa    MW: 34435.8 Da    PI: 5.6813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-15113164155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  XP_009110135.1 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKKLE 164
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-12111168No hitNo description
SuperFamilySSF474595.63E-17112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPLESVVYPQ DPLSYPSTCK DFMFQDLYYQ EEVVVAQDTK NNMNKLGQEQ SFVENDKEED  60
RQWRDYHQYP LLPSLEEELG LPAIDMESHP PLPQRRKRGR TRSNKNVEEI ENQRMTHIAV  120
ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KKLEHILQSM EPNRTTTITH  180
EANTSTSSLV DPFSDFFSFP QYSTKSSSIT EGSSSPAEIE VTVAEGHANI KIMAKKKPKQ  240
LLKLVASLQS LRLTLLHLNV TTLDNSILYS ISVKVEEGSQ LTTVDDIATA LNQIIRRIQE  300
ES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113124RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110135.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK911e-165BH094_ARATH; Transcription factor bHLH94
TrEMBLM4DIQ00.0M4DIQ0_BRARP; Uncharacterized protein
STRINGBra016377.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-142bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]