PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009110322.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 377aa MW: 43314.6 Da PI: 6.5891

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009110322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.8	6e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk XP_009110322.1 9 KRLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 53 6889****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.838	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-27	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.94E-28	2	82	No hit	No description
PRINTS	PR00404	6.7E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-20	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.7E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEGLSNQ 120 VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YAKNQLLPLD 180 CTTTQFHSGI QLPLAMEGNN SMQEAHSMSW LPNNDNQETI LPGESSFLPH REMDGLNPVY 240 SNGFFESVKQ EDQMCSNQGQ QFEQLEQQQG HGCLGLQQIG EEFSYPTPFG TTLGMDEDQE 300 KKIKSEMELN NLQQKQQQQD PSSMYAPTAN NGGCFQNPHD QSMFSTDHHH HYQHYQHHQN 360 WVPGPVFGQA SYNQQPN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKPTVFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR NQTIEGLSNQ  120
VAISQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQFHKEH YAKNQLLPLD  180
CTTTQFHSGI QLPLAMEGNN SMQEAHSMSW LPNNDNQETI LPGESSFLPH REMDGLNPVY  240
SNGFFESVKQ EDQMCSNQGQ QFEQLEQQQG HGCLGLQQIG EEFSYPTPFG TTLGMDEDQE  300
KKIKSEMELN NLQQKQQQQD PSSMYAPTAN NGGCFQNPHD QSMFSTDHHH HYQHYQHHQN  360
WVPGPVFGQA SYNQQPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
5f28_A	1e-13	1	96	1	94	MEF2C
5f28_B	1e-13	1	96	1	94	MEF2C
5f28_C	1e-13	1	96	1	94	MEF2C
5f28_D	1e-13	1	96	1	94	MEF2C
6byy_A	1e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-13	1	92	1	90	MEF2 CHIMERA
6c9l_A	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-13	1	92	1	90	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009110322.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018508940.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65
Refseq	XP_022546511.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A3P6C9C0	0.0	A0A3P6C9C0_BRACM; Uncharacterized protein
STRING	Bo8g068060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]