PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110521.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 298aa    MW: 33353 Da    PI: 10.0653
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110521.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind342.31.2e-104262981301
       GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllalll 86 
                     mdddg+  rn+gyyepa a++k nlglqlmss  +r++k+    r+ nl ++++++++++ +    m++    +++++       +++k++++l+
  XP_009110521.1  26 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSSA-DRNTKPflpgRDPNL-MIGQNGSYHHAEppihMSY----NWINQ-------QKDKFFNMLP 105
                     99**99..9*******999*************9.9**************.************5555555....*****.......899******* PP

       GAGA_bind  87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
                     v+++     p++ +vl++t+s+ s+++++++q+e+++v+ +eee     +i++ +++ k+++     + ++++k kk +k+k+     ++++k++
  XP_009110521.1 106 VTTT-----PNYGNVLPETSSAPSMHHHHHHQTEENPVKCEEEE-----EIVQPNKKRKTNS-----KASATAKGKKPRKPKE-----ENDSKTN 180
                     9986.....9****************************965555.....4444322222222.....3445666677777777.....2344455 PP

       GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
                        +r+k  kks+dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+G WqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL+++G
  XP_009110521.1 181 V--SRVKPAKKSVDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGSWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLSSDG 273
                     5..689***************************************************************************************** PP

       GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++++ p+DLk+hWA+HGtnkfvtir
  XP_009110521.1 274 FNFGSPIDLKSHWARHGTNKFVTIR 298
                     ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-16326298IPR010409GAGA-binding transcriptional activator
PfamPF062172.3E-9526298IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLVPTRKCSY VGISYKSSLD FISLKMDDDG FRNWGYYEPA AATFKGNLGL QLMSSADRNT  60
KPFLPGRDPN LMIGQNGSYH HAEPPIHMSY NWINQQKDKF FNMLPVTTTP NYGNVLPETS  120
SAPSMHHHHH HQTEENPVKC EEEEEIVQPN KKRKTNSKAS ATAKGKKPRK PKEENDSKTN  180
VSRVKPAKKS VDLVINGVNM DISGLPVPVC TCTGAPQQCY RWGCGSWQSA CCTTNISMHP  240
LPMSTKRRGA RISGRKMSQG AFKKVLEKLS SDGFNFGSPI DLKSHWARHG TNKFVTIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.134200.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110521.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110521.10.0PREDICTED: protein BASIC PENTACYSTEINE2 isoform X1
SwissprotQ9LDE21e-170BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A397YEP10.0A0A397YEP1_BRACM; Uncharacterized protein
STRINGBra016686.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-162basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]