PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110566.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 120aa    MW: 13647 Da    PI: 4.3872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.4e-071232222
             AP2  2 gykGVrwdkkrgrWvAeIrd.p 22
                    +y+GVr ++ +g+++AeI+d p
  XP_009110566.1 12 KYRGVRKRP-WGKYAAEIQDsP 32
                    8********.*********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-71232IPR001471AP2/ERF domain
PROSITE profilePS510329.0711253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEHKVSNTNE VKYRGVRKRP WGKYAAEIQD SPDMMRSGLE RLTLRKTRLG PHEYPMMTDD  60
PSGASENVVA SSSSQFSGTD GGNMKEVIEF DYLDDSLLEE LLECGENYNQ EDQNDTNHLL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110566.15e-86PREDICTED: ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC62e-18ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLM4E4P51e-84M4E4P5_BRARP; Uncharacterized protein
STRINGBra023749.1-P2e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-16ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]