PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009110938.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 607aa    MW: 67781.6 Da    PI: 9.8075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009110938.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07505554147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009110938.1 505 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 554
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864500559IPR017930Myb domain
SMARTSM007177.0E-7504557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-10505555IPR009057Homeodomain-like
CDDcd116601.13E-16506556No hitNo description
SuperFamilySSF466891.98E-15506587IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MVLQTRLDYG FNGYEVPPTP RAARSPRKSA FKKKSENNQI SSSFDLLAAV AGKLLLESGG  60
VSSSSSNNAS GDNNEDQCGG KKESGDQMVV GETHCDHHHD NNAERSFFVS EILPKAHEME  120
SFNRSPNPNK DFLFGSTSGI TYEYSSEKLG TQELAYEEAK IHNGDCFRSD SNGKKPMLER  180
LNCEPELSRN KDKHHIDNSL NGMENNDGEN FSARYATKSF RSTLRVGDGR VKKVMSSKYC  240
KVSSNQKDTM VAGSDLDLKP GYYSKKHCFK SLRSEKKYPI KKRRYFDGYT ASQSEETVRN  300
EGLSGSPRKA FLSTIACQKQ PALQSRDSHV KLGIKSFRVP ELSIEVPETA TIGSLKRTVL  360
EAVTTILEGG LRIGVLVHGK KVRDDNKMLL QTGISLDTLS DTLSFCLETN PPQSTKPLSP  420
KDSDYMRPCY VPHTITRCLP SLGKHAKPSD SVESDLDSKP SSPFRAKPVY SRALIPVSPP  480
LHAQALNVVP PRKPKRSEVA QRRIRRPFSV AEVEALVQAV ERLGTGRWRD VKLRAFDNAK  540
HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLM AHAYWSQQQG KQQLLEGPQN  600
LETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-574925944106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009110938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110938.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_013657560.10.0telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM4EPG90.0M4EPG9_BRARP; Uncharacterized protein
STRINGBra030689.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2