PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111038.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 148aa    MW: 16515.7 Da    PI: 7.5049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001338751254
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    R d+  ++++ L++++ +      +K + a++L+ A +YI  L
  XP_009111038.1 38 RKDKAGDRISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75
                    66777799********999.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.1372675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-103788IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-73790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEFSREAGMM MENKQNVCSL EENSIKRHKS DLSFSSKRKD KAGDRISALQ QIVSPYGKTD  60
TASVLQDALH YIEFLHEQVK VLSAPYLQTM TAATQEELEQ YSLRNRGLCL VPMEYTAGVA  120
QSNGADIWAP VKTPPSPAFG VKSQSPFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.172330.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530541e-153AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111038.11e-109PREDICTED: transcription factor bHLH113-like isoform X3
SwissprotQ7XJU25e-94BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A397YFY51e-107A0A397YFY5_BRACM; Uncharacterized protein
STRINGBra030622.1-P3e-97(Brassica rapa)
STRINGBo8g005780.11e-105(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-96bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]