PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111103.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 161aa    MW: 18166.6 Da    PI: 9.0357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000321941223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    kC+ C++ F ++ +L +H +t H
  XP_009111103.1 19 KCSLCNRIFLTPQDLISHCNTfH 41
                    7*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5171846IPR007087Zinc finger, C2H2
PROSITE patternPS0002802041IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MIGGFSMRKD FMHVSKPQKC SLCNRIFLTP QDLISHCNTF HSNHHFPTFS SSAAAAPTIF  60
RHHYPNPNHA MSGRNGFYLN YYRSGHIDEQ GMFLKGCPAN TPANNSNFLF GQQEKPKLIN  120
FFPAMASESS RTLPLLCQLE QRRPSQDTAT ESGSIDLTLR L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461434.12e-63PREDICTED: uncharacterized protein LOC108832445
TrEMBLA0A3P6CFD11e-117A0A3P6CFD1_BRACM; Uncharacterized protein
STRINGBra030571.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.11e-32C2H2-like zinc finger protein