PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111357.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 425aa    MW: 48141.1 Da    PI: 7.3895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.96.8e-3961363128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevls 94 
                     +G+rF+Pt ee++++yLk+k+ +k+  ++e+i+e++i+ ++P+ Lp  +k+++++  wyfF++r+ ++++ +k ++r+t sg+Wkatgkd+ + +
  XP_009111357.1   6 VGYRFSPTGEEVINYYLKNKILDKPWLVNEAINEINICAYDPEFLPslSKLESKDLVWYFFTPREYHASEkKKGTKRTTPSGFWKATGKDRIIRD 100
                     7************************999899***************5447777888********9988762667888*****************9 PP

             NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k  +g ++g+kktLv+++g+a +g+ t Wvmhey+ 
  XP_009111357.1 101 KrgHGVEIGIKKTLVYHHGKAANGVGTPWVMHEYHT 136
                     9777788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.6244154IPR003441NAC domain
SuperFamilySSF1019415.1E-435154IPR003441NAC domain
PfamPF023652.2E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MERNLVGYRF SPTGEEVINY YLKNKILDKP WLVNEAINEI NICAYDPEFL PSLSKLESKD  60
LVWYFFTPRE YHASEKKKGT KRTTPSGFWK ATGKDRIIRD KRGHGVEIGI KKTLVYHHGK  120
AANGVGTPWV MHEYHTTSLP LNQRNYVICQ VMYKGADGDS LYGNNSNALS HSMVSDLNTI  180
REINTAPQVE QPRQDLYLSV DDLANPLNEQ DDPSLFNPDT LFNDSYWEDE YINDLLGFNG  240
GNYDDVLRAP DITMQEDRND HRPKKALTGI IVDCSSDSDA ESISATSYQE TSSPDSFHSL  300
SAQFHTSGDE IPSLRKDSCT DIKPHAETSI NRKTRKAHLT RRTVPSKQEV NEGKSKAVNA  360
SVDKKKSSSS MVKTEKKGWF ITEEAMDRRN RKKPRYIYLM NMIIGLILLV AVIGNITSVS  420
LSVKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-21715420165NO APICAL MERISTEM PROTEIN
1ut4_B7e-21715420165NO APICAL MERISTEM PROTEIN
1ut7_A7e-21715420165NO APICAL MERISTEM PROTEIN
1ut7_B7e-21715420165NO APICAL MERISTEM PROTEIN
3swm_A7e-21715423168NAC domain-containing protein 19
3swm_B7e-21715423168NAC domain-containing protein 19
3swm_C7e-21715423168NAC domain-containing protein 19
3swm_D7e-21715423168NAC domain-containing protein 19
3swp_A7e-21715423168NAC domain-containing protein 19
3swp_B7e-21715423168NAC domain-containing protein 19
3swp_C7e-21715423168NAC domain-containing protein 19
3swp_D7e-21715423168NAC domain-containing protein 19
4dul_A7e-21715420165NAC domain-containing protein 19
4dul_B7e-21715420165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388394RNRKKPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.27510.0bud| flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111357.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204390.0KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111357.10.0PREDICTED: NAC domain-containing protein 69-like
SwissprotQ9M1261e-160NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4F5H10.0M4F5H1_BRARP; Uncharacterized protein
STRINGBra036327.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-141NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]