PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111358.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 288aa MW: 32696.1 Da PI: 4.9424

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.4	1.4e-40	6	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +GfrF Ptdeel++++Lk+k+ gk+ +++ i+ev i+++eP +Lp+ ++k+++ wyf s+++ k+++++ ++r+t sg+Wk+tgkd+++++ XP_009111358.1 6 VGFRFCPTDEELINYFLKNKILGKPWLVDDKIREVSICSYEPASLPAlsMIKSKDLVWYFLSPKEYKSPKKSLTKRTTPSGFWKSTGKDRKIKED 100 7**********************999999***********4447788888*********************************98 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+kktLv+++g++++++ t W+mhey++ XP_009111358.1 101 krrDGVVIGIKKTLVYHEGKSSNAVPTPWIMHEYHI 136 6666777*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.831	4	155	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-46	6	155	IPR003441	NAC domain
Pfam	PF02365	3.0E-24	6	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
METSNVGFRF CPTDEELINY FLKNKILGKP WLVDDKIREV SICSYEPASL PALSMIKSKD 60 LVWYFLSPKE YKSPKKSLTK RTTPSGFWKS TGKDRKIKED KRRDGVVIGI KKTLVYHEGK 120 SSNAVPTPWI MHEYHITCLP LADQSIYVIC KLFYKGNVGD IPSGSNSTKP SHYLVISDSN 180 TVEATNTPPQ VEQAGQESLS GFSVNDVTML MNEQEDLSPW DTLCPIPNTL FIDNNDNTKV 240 QLQTTCLAQN DDEDLGAFTQ IESLLADHQE FITQENFEEY MLKWSCLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-25	7	157	18	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111358.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013722780.1	0.0	NAC domain-containing protein 69-like
Swissprot	Q9M126	2e-94	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	M4F5H2	0.0	M4F5H2_BRARP; Uncharacterized protein
STRING	Bra036328.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	4e-91	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]