PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111374.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 311aa MW: 35495 Da PI: 5.5902

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	131.8	4.9e-41	5	133	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevl 93 p+GfrF+Pt el+++yLk+k+ +k+ ++e+i+e++i+ ++P+ Lp +k+++++ wyfF++r+ + ++ +k ++r+t sgyWkatg d+++ XP_009111374.1 5 PVGFRFSPTGLELINHYLKNKILDKPWLVDEAINEINICAHDPKFLPslSKLESKDLVWYFFCRREYHVSEkKKGTKRTTPSGYWKATGVDRKIR 99 89**********************999999***********5447777888****9998862667888************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg ++g+kktLv+++g++ +g+ t Wvmhey++ XP_009111374.1 100 E-KGVEIGIKKTLVYHEGKSTNGVWTPWVMHEYHI 133 9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-45	4	151	IPR003441	NAC domain
PROSITE profile	PS51005	43.218	4	151	IPR003441	NAC domain
Pfam	PF02365	8.0E-25	5	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKKKPVGFRF SPTGLELINH YLKNKILDKP WLVDEAINEI NICAHDPKFL PSLSKLESKD 60 LVWYFFCRRE YHVSEKKKGT KRTTPSGYWK ATGVDRKIRE KGVEIGIKKT LVYHEGKSTN 120 GVWTPWVMHE YHITSLPPNQ RNYVICQVMY KGADGDSLYG NNSNELSHST MVSDLNTVRE 180 INTAPEVEQP REEDFYMSWD DLANPLNEQD DPSLFNPDTF FIDYCPYQQQ PQAPCDDDYI 240 SKLLSFNGGN HADVLGDLDI TMQEHRNDHR PTKALTGIIV DCSSDNDAKS ISATVSMLEP 300 IIINLTGLST Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	5	151	18	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	5	151	18	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	5	151	18	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	5	151	18	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	5	151	21	168	NAC domain-containing protein 19
3swm_B	1e-22	5	151	21	168	NAC domain-containing protein 19
3swm_C	1e-22	5	151	21	168	NAC domain-containing protein 19
3swm_D	1e-22	5	151	21	168	NAC domain-containing protein 19
3swp_A	1e-22	5	151	21	168	NAC domain-containing protein 19
3swp_B	1e-22	5	151	21	168	NAC domain-containing protein 19
3swp_C	1e-22	5	151	21	168	NAC domain-containing protein 19
3swp_D	1e-22	5	151	21	168	NAC domain-containing protein 19
4dul_A	1e-22	5	151	18	165	NAC domain-containing protein 19
4dul_B	1e-22	5	151	18	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.2751	0.0	bud\| flower\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111374.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ420439	0.0	KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111374.2	0.0	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	1e-111	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	M4F5H0	0.0	M4F5H0_BRARP; Uncharacterized protein
STRING	Bra036326.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-108	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]