PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111469.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 790aa    MW: 86496.6 Da    PI: 6.2401
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-21124179156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  XP_009111469.1 124 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 179
                     688999***********************************************999 PP
2START203.49.2e-643105301206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     ela++a++elvk+a+++e++W ks     +++n +e++++f+++k     +ea+r+sg+v+ ++  lve+l+d+  +W+e+++    + +t++vi
  XP_009111469.1 310 ELALTAMDELVKLAQSDEQLWIKSLdgerDELNHEEYMRTFSSTKPngLVTEASRTSGMVIINSLALVETLMDSD-RWTEMFPcivaRSTTTDVI 403
                     5899*************************************99999999**************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdl 172
                     s g      ga+qlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s  v+R  +lpSg++++++sng+skvtwveh+++
  XP_009111469.1 404 SGGmagtrnGAIQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSTVVIR--RLPSGCVVQDMSNGYSKVTWVEHAEY 496
                     ***********************************************************76666666..************************** PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++h l+r+l++sgl +g ++wvatlqrqce+
  XP_009111469.1 497 DENQIHHLYRPLLRSGLGFGSQRWVATLQRQCEC 530
                     ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-20111181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-22111181IPR009057Homeodomain-like
PROSITE profilePS5007117.281121181IPR001356Homeobox domain
SMARTSM003899.9E-18122185IPR001356Homeobox domain
CDDcd000861.49E-18124181No hitNo description
PfamPF000462.0E-18124179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084844.623301533IPR002913START domain
SuperFamilySSF559613.63E-31305530No hitNo description
CDDcd088751.60E-114305529No hitNo description
PfamPF018526.2E-57310530IPR002913START domain
SMARTSM002342.4E-39310530IPR002913START domain
SuperFamilySSF559613.21E-21550774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MNFGSLFDNT TGGVPTGLAY GNHTTASTII PGGTMSHIGA ASLFSPPINT KSVYSSSGLS  60
LALEQPERGT SMRNHNGAGG DIFDGSGKNR RSREEEHESR SGSDNVEGIS GEDQDADYNK  120
PPKKKRYHRH TPQQIQELES MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT  180
QLERHENALL RQENDKLRAE NMSIREAMRN PTCNICGGPA MLGEVSIEEH HLRIENARLK  240
DELDRVFNLT GKFLGHPQNN HTSSLELGVG TNNNGGNFAF PQDFNGGGGC LPPQLPAVVN  300
GVDQRSVLLE LALTAMDELV KLAQSDEQLW IKSLDGERDE LNHEEYMRTF SSTKPNGLVT  360
EASRTSGMVI INSLALVETL MDSDRWTEMF PCIVARSTTT DVISGGMAGT RNGAIQLMNA  420
ELQVLSPLVP VRNVNFLRFC KQHAEGVWAV VDVSIDTVRE NSGGSTVVIR RLPSGCVVQD  480
MSNGYSKVTW VEHAEYDENQ IHHLYRPLLR SGLGFGSQRW VATLQRQCEC LAILMSSSVT  540
SHDDTSISPG GRKSMLKLAQ RMTINFCSGI SAPSVHSWSK LTVGNVDPDV RIMTRKSVDD  600
PSEAPGIVLS AATSVWLPAS PQRLFYFLRN ERMRCEWDIL SNGGPMQEMA HIAKGQDQGN  660
SVSLLRSNPM NANQSSMLIL QETCIDASGA LVVYAPVDIP AMHVVMNGGD SSYVALLPSG  720
FAVLPDGGFN GGSGDGEQRP VGGGSLLTVA FQILVNNLPT AKLTVESVET VNNLISCTVQ  780
KIRTALQCEN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111469.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLM4F8E30.0M4F8E3_BRARP; Uncharacterized protein
STRINGBra037355.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]