PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111617.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 251aa    MW: 28623.3 Da    PI: 10.1766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-162166147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W   Ed +l ++v  +G+ +W+ Ia++m+ gRt+k+c++rw++ 
   XP_009111617.1 21 RGHWRVSEDSQLTELVSVHGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 66
                     899*****************************.***********996 PP
2Myb_DNA-binding46.31e-1474117247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a+  +G++ W+ Ia+ ++ gRt++ +k++w+ +
   XP_009111617.1  74 RAFSVEEEERLLAAHGAFGNK-WAMIAKIFN-GRTDNALKNHWHVL 117
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9541667IPR017930Myb domain
SMARTSM007172.6E-132069IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2721114IPR009057Homeodomain-like
PfamPF002492.6E-152166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-242274IPR009057Homeodomain-like
CDDcd001671.16E-112465No hitNo description
PROSITE profilePS5129424.77268122IPR017930Myb domain
SMARTSM007173.3E-1272120IPR001005SANT/Myb domain
PfamPF002493.4E-1174117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-1975122IPR009057Homeodomain-like
CDDcd001671.78E-875118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMVKVSDESK KKQRGSRVCS RGHWRVSEDS QLTELVSVHG PQNWNHIAEK MQGRTGKSCR  60
LRWFNQLDPR INKRAFSVEE EERLLAAHGA FGNKWAMIAK IFNGRTDNAL KNHWHVLMAR  120
KLRQQSSSYT RRFNGSAHKP NADHTSFNIS PDDDEMNMEK NSWKMLKEGT TNMKAQYLQE  180
EYRSPRMPMH GHYSTFSADS LALTLHVSIQ EPSSSLSSLS LPSSSAEYTM VATKPPAFID  240
FLGVGHQSLN I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-28211224105C-Myb DNA-Binding Domain
1msf_C1e-28211224105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509807.11e-177PREDICTED: transcription factor WER-like
TrEMBLA0A397KV841e-175A0A397KV84_BRACM; Uncharacterized protein
STRINGBo9g008750.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-133myb domain protein 110