PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111675.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 479aa    MW: 53295.3 Da    PI: 6.927
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111675.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.41.6e-14116154241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  XP_009111675.1 116 KQKHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNNLE 154
                     79**************************.********976 PP
2TCR53.25.8e-17201240140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a++ Cse+C+C+dCkN e
  XP_009111675.1 201 KHSKGCHCKKSGCLKKYCECFQANVLCSENCRCQDCKNFE 240
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-16115155IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.257116241IPR005172CRC domain
PfamPF036384.3E-11117152IPR005172CRC domain
SMARTSM011143.0E-19201242IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.5E-13204239IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDNSDQDLGS PRNQLARRLD FSVSAAAAEM ESSLLDSNYS REDHKEEDLL PPPPPSGSEE  60
QVLKPPVRSE LTTPPQKPPP LNGFDHKSAK CRVSKQEPLT PRGHTEAASN EGTPRKQKHC  120
NCKNSKCLKL YCECFASGSY CNGCNCLNCH NNLENESARQ EAIKGTLERN PDAFKPKIAG  180
SPLGTEDLQE DMRHQQLILG KHSKGCHCKK SGCLKKYCEC FQANVLCSEN CRCQDCKNFE  240
GSVERNTLLH GPETYIQQQT VHINPLESRK RKSKEASHSA RGSSAVPHLI RNGDTSLFSV  300
PNNREVSGST ACSYRSSLSN TIQPRHVKDL CALLVTKSLD VANKRRKSEK DPSLDPALRD  360
ANETNDSPDC VLDSTRMDEK PLSPATRALM CDDEDVIISE KETSAARVKT SQEKEEDADT  420
SSESFVEQER QILSSFRDFL IQFSNRGNIK GMNIKTKTNQ SRKEPPEDEE QRNQNSGLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-341102504132Protein lin-54 homolog
5fd3_B5e-341102504132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111675.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A397XW800.0A0A397XW80_BRACM; Uncharacterized protein
STRINGBra036551.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-170Tesmin/TSO1-like CXC domain-containing protein