PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111686.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 171aa MW: 18981.5 Da PI: 5.6705

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.8e-30	110	168	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrK G+K+vk+s++pr+YY+C++ gCpvkk+ver+++dp++v++tYeg Hnh+ XP_009111686.1 110 LDDGFKWRKXGKKMVKNSPNPRNYYKCSTDGCPVKKRVERDRDDPSFVITTYEGFHNHS 168 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-32	96	169	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-27	103	168	IPR003657	WRKY domain
PROSITE profile	PS50811	29.241	105	170	IPR003657	WRKY domain
SMART	SM00774	4.7E-34	110	169	IPR003657	WRKY domain
Pfam	PF03106	4.6E-24	111	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MNDAETNLAR SFSADTHSGL DIPDLYLSDE WMDDDLAYAV SGMNQSYTYQ TSDAAAFFSG 60 SSSSLGHPES SSTNGSAATA TASAENQVKK ENKKVKERVA FKTQSEVEVL DDGFKWRKXG 120 KKMVKNSPNP RNYYKCSTDG CPVKKRVERD RDDPSFVITT YEGFHNHSSM N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	100	167	7	74	Probable WRKY transcription factor 4
2lex_A	3e-26	100	167	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111686.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172883	1e-139	AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018509621.1	1e-125	PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 50
Swissprot	Q8VWQ5	4e-89	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A397Y0Z1	2e-97	A0A397Y0Z1_BRACM; Uncharacterized protein
STRING	Bo7g095430.1	8e-92	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6121	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-69	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]