PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111833.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 423aa    MW: 47722 Da    PI: 4.5097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-08351406147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE+  l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++ 
   XP_009111833.1 351 RLLWTPEEEYMLKVGVEKFSAEakkniPWRKILEMGQkvfhETRTPSDLKDKWRNM 406
                      677******************************9999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.294346407IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-9347414IPR009057Homeodomain-like
SuperFamilySSF466891.33E-9349408IPR009057Homeodomain-like
SMARTSM007172.2E-4350409IPR001005SANT/Myb domain
PfamPF139214.6E-6354417No hitNo description
CDDcd116603.10E-10354407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTRSKSLPIR SSRKSLDPSP ASLPEESNQG VSNKRYPPQI EIGDDDVEIV TDTFDGRDKK  60
RHCVGTSEPL SLEACIVCET SDELVYRCCG ADCLLWFHEE CLKAEFGSGG EDPANPFCPY  120
CWFQILAVES IRLKEKAVGA ETAVFKYLDK EMRSKGQEDS VGTTDIVSDQ EVEVDEKCSD  180
ESRGEDMAAL VEETDQSEGG KENFEVCTDR VVDEEERVVT ENFLDDEDDE AAGDQTRGNA  240
DAGKERDVSP FLSMQESFSG REHDQVQQSE KRRRKRRLIL NAFDSDVSSN GSTNEPNGED  300
AVENITSLAL VVTSPPGMMK NHQREDSRTT KVDNSKTVRD IPIFKMDQKR RLLWTPEEEY  360
MLKVGVEKFS AEAKKNIPWR KILEMGQKVF HETRTPSDLK DKWRNMTGAR LKNKQDSTTV  420
PGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269277EKRRRKRRL
2270276KRRRKRR
3270277KRRRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111833.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893050.0AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111833.10.0PREDICTED: uncharacterized protein LOC103837245
TrEMBLM4F5250.0M4F525_BRARP; Uncharacterized protein
STRINGBra036179.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327