PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111844.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 263aa MW: 28090.3 Da PI: 6.2387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.8e-05	152	191	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_009111844.1 152 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191 67788999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.839	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-11	149	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-4	150	195	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.1E-7	151	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MGDTREDQED RAMMETAGVS SFSELLMLSG GVLSSSDHHL NDIGADGGED SFGFVFSGST 60 GSRMLCFSGD CQNDDESLFL QPSLPSGVSV SDPSCTTNIC KNSNDACADN KSTKSSTKRI 120 GSVNGQTMDH NRKPSKKCKQ NQEKPSVGTA KVRKERLGER IAALQQLVSP YGKTDAASVL 180 HEAMGYIKFL QDQIQVLCSP YLTNYSLDGG VVTGDVRAGK KVRDLRSRGL CLVPVSSTVL 240 LESSNGADFW SPATMGHTTS SSH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111844.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111844.1	0.0	PREDICTED: transcription factor bHLH113-like isoform X2
Refseq	XP_013675106.1	0.0	transcription factor bHLH113 isoform X2
Swissprot	Q9LT67	1e-143	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A078IJH5	0.0	A0A078IJH5_BRANA; BnaA01g26110D protein
TrEMBL	A0A3P5ZX88	0.0	A0A3P5ZX88_BRACM; Uncharacterized protein
TrEMBL	M4FAU6	0.0	M4FAU6_BRARP; Uncharacterized protein
STRING	Bra038211.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-126	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]