PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111957.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 169aa    MW: 19047.3 Da    PI: 4.4546
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB79.25.6e-2511102392
           NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y.lkkyre 92 
                     ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al  lGf +y+e++ + y  +ky  
  XP_009111957.1  11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEDRRTIAPEHVLKALQVLGFGEYIEEVYAaYeQHKYET 102
                     6899***************************************************************************9865141345544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-398139IPR009072Histone-fold
SuperFamilySSF471131.32E-3512142IPR009072Histone-fold
PfamPF008082.7E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE  60
VCNKEDRRTI APEHVLKALQ VLGFGEYIEE VYAAYEQHKY ETMQDTQRSV KCNSGAQMTE  120
EEAAAEQQRM FAEARARMNG GAPVPQPQHP ETEHPESDHP ETDQRSLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-331213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.91360.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009111957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174601e-161AK317460.1 Arabidopsis thaliana AT5G23090 mRNA, complete cds, clone: RAFL23-07-M17.
GenBankATHDR1B1e-161D38110.1 Arabidopsis thaliana mRNA for Dr1, complete cds.
GenBankAY0577091e-161AY057709.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
GenBankAY1169601e-161AY116960.1 Arabidopsis thaliana AT5g23090/MYJ24_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111957.11e-124PREDICTED: protein Dr1 homolog isoform X1
RefseqXP_013661064.11e-124protein Dr1 homolog isoform X1
SwissprotP495921e-107NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A078FUY01e-123A0A078FUY0_BRANA; BnaA09g05430D protein
TrEMBLA0A397Y1B01e-123A0A397Y1B0_BRACM; Uncharacterized protein
STRINGBo9g014320.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.21e-85nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]