PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009111959.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 201aa MW: 23376.1 Da PI: 7.8274

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009111959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.2	1.7e-13	82	137	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + +r+rr +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + XP_009111959.1 82 DERRARRVVSNRESARRSRMRKKKQIEELQQQVEQLMVLNHNLSEKVINLLESNHQ 137 6689****************************************999888766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-14	80	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	82	145	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-11	84	140	No hit	No description
SuperFamily	SSF57959	8.75E-11	84	136	No hit	No description
Pfam	PF00170	6.7E-12	84	138	IPR004827	Basic-leucine zipper domain
CDD	cd14702	3.32E-15	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MIRHLKPNME SSPHRSHHCF DILEGMPPQD DHFNSSFLQN PNFHVHLQSI SPNLSTRSNN 60 NRSDHLDPNG EPFCHREGLD PDERRARRVV SNRESARRSR MRKKKQIEEL QQQVEQLMVL 120 NHNLSEKVIN LLESNHQIIQ ENSHLKEKVN SFHLLMAEML IPMRNVDGSI NDRDANHLRG 180 ETSNRTNTFF GRHCTEIAGS A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009111959.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111959.1	1e-146	PREDICTED: basic leucine zipper 43-like
Refseq	XP_013659178.2	1e-146	basic leucine zipper 43-like
TrEMBL	A0A078FVP2	1e-136	A0A078FVP2_BRANA; BnaA09g05450D protein
STRING	Bo9g014350.1	1e-133	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	2e-71	basic leucine-zipper 70