PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112123.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 999aa    MW: 111818 Da    PI: 6.0973
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11894.6e-59191362118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fq
  XP_009112123.1  19 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQ 113
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcyw+Le+el +iv+vhylevk
  XP_009112123.1 114 RRCYWMLEQELMHIVFVHYLEVK 136
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.82615141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.26E-12401485IPR014756Immunoglobulin E-set
SuperFamilySSF484032.64E-19580693IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.182582664IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-18582694IPR020683Ankyrin repeat-containing domain
PfamPF127964.9E-8583658IPR020683Ankyrin repeat-containing domain
CDDcd002043.47E-16588691No hitNo description
PROSITE profilePS500889.351599631IPR002110Ankyrin repeat
SMARTSM002481500599628IPR002110Ankyrin repeat
PROSITE profilePS5008811.301632664IPR002110Ankyrin repeat
SMARTSM002484.7E-4632661IPR002110Ankyrin repeat
SMARTSM000150.32809831IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.56E-8810859IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858811839IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019811830IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092832854IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304833857IPR000048IQ motif, EF-hand binding site
PfamPF006124.4E-4835854IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MAYRGSFGFA PQLDIQQLLS EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQELMHIVFV HYLEVKGNRI SSSGIKENNS NSLSGSTSVN IDSTANTSST LSPLCEDADS  180
GNRDGWIHGN RVKESDSQRL VGVPALDASF ENPLARYQNP PYNPLLTQTN PTNTGLMSVE  240
GHLRNPLQNQ VNWQIPVQDS LPLQKWPMDS HGTDLALHEN FGTFSSLIGS QNQQQPIGGG  300
SFQAPFTSVE AAYIPKFGPE DLLYEASANQ TLPLRKSLLK KEDSLKKVDS FSRWVSNELA  360
EMEDLQMQSS SGGIGWTSVE TAAAASSLSP SLSKDQRFTM IDFWPKWTQT DTEVEVMVIG  420
TFLLSPQEVT SYSWACMFGE VEVPAEILVD GVLCCHAPPH EVGQVPFYIT CSDRFSCSEV  480
REFDFLPGSA RKLNTVDIYG AYTNEASLHL RFENLLARMS SAQEHNVFED VGEKRRKISR  540
IMLLKDEKES FLTSTVEKDL TEVEAKERLI REEFEDKLYL WLIHKVTEEG KGPNILDEEG  600
QGVLHLAAAL GYDWAIKPIL AAGVSINFRD ANGWSALHWA AYSGREDTVA LLVSLGADSG  660
ALTDPSPELP LGKTASDLAY GNGHRGISGF LAESSLTSYL EKLTVDGKED ASTDSSRAKA  720
VQTVAERTAT PMSYGDVPET LSMKDSLTAV LNATQAADRL HQVFRMQSFQ RKQLSEIGDK  780
NEFGLSDELA VSFAAGKTKK AGGHSSGAAV HAAAVQIQKK YRGWKKRKEF LLIRQRIVKI  840
QAHVRGHQVR KQYRAIIWSV GLLEKIILRW RRKGSGLRGF KRDAVTKAPE PVCAAPAQED  900
DYDFLKEGRK QTEERLQKAL TRVKSMAQYP EARAQYRRLL TVVEGIRENE ASSSSAMNNN  960
NNNNNNSNTE EAANYNEEDD LIDIDSLLDD DTFMSLAFE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.50640.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112123.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112123.10.0PREDICTED: calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A397XS620.0A0A397XS62_BRACM; Uncharacterized protein
STRINGBra037769.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]