PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112210.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 98aa MW: 10840.6 Da PI: 11.7506

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + k R+ ++k++w++ XP_009112210.1 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDPHfssvlKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.388	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.39E-17	2	61	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-15	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	8.52E-18	6	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILSDPHFSSV LKSRSNVDLK DKWRNISVTA 60 LWGSRKKAKL ALKRALPLRR GGGGWRPALH SIPEFGSS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.8126	1e-124	bud\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189526	2e-78	AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112207.1	2e-47	PREDICTED: telomere repeat-binding factor 2-like
Refseq	XP_009112208.1	2e-47	PREDICTED: telomere repeat-binding factor 2-like
Refseq	XP_013612577.1	2e-47	PREDICTED: telomere repeat-binding factor 2-like
Refseq	XP_013711873.1	2e-47	telomere repeat-binding factor 2-like
Swissprot	Q9FJW5	1e-42	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	M4F9S4	5e-63	M4F9S4_BRARP; Uncharacterized protein
STRING	Bra037837.1-P	8e-64	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16580	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	3e-38	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]