PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112344.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 212aa MW: 22573 Da PI: 9.199

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	2e-37	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk k+s XP_009112344.1 24 QQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKTSKRS 84 68999***************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	2	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MPSDLNDSRR VTTKLPHGGA AAEQQEQLPC PRCESTNTKF CYYNNYNFSQ PRHFCKSCRR 60 YWTHGGTLRD IPVGGVSRKT SKRSRAFSSV AAAGSRNFPL QATPVLFPPS SYGGGKGNTS 120 SLYGGFTTLL GNNAAASRDG PGGGFNGPEG FGLGLGHGLY LDEVRFGQGI TAWPFSTGAT 180 DAATSHVVPI HATWQLEGTE SRVGFVAGDY LA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.26309	5e-65	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112344.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112344.1	1e-156	PREDICTED: dof zinc finger protein DOF5.8
Swissprot	Q9FGD6	1e-104	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	M4F7S4	1e-155	M4F7S4_BRARP; Uncharacterized protein
STRING	Bra037135.1-P	1e-156	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-97	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]