PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112382.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 155aa MW: 18315.4 Da PI: 10.5646

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.3	8.5e-25	30	78	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + s ed++ yF++pi++AAkeLgv+lT+LKr+CR++G +RWPhRk++s+ XP_009112382.1 30 KFSREDMKPYFKMPITKAAKELGVGLTLLKRRCRELGFSRWPHRKLTSI 78 67899*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.428	14	98	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-21	32	78	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MEIILHDGNN TTKETTMQKR RYRGDRLIQK FSREDMKPYF KMPITKAAKE LGVGLTLLKR 60 RCRELGFSRW PHRKLTSIDG LINNLKDHLG KMEGEVNRSK LMNALEILEA EKKMIEEFPD 120 LEFEDKTKRL RQACFKANYK RRRLLCSMST TSFVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	143	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112382.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112382.1	1e-112	PREDICTED: protein RKD3
Refseq	XP_022548100.1	1e-111	protein RKD3-like
Swissprot	Q9FGD1	3e-65	RKD3_ARATH; Protein RKD3
TrEMBL	A0A078G1X7	1e-110	A0A078G1X7_BRANA; BnaA09g07620D protein
STRING	Bra037130.1-P	1e-103	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-67	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]