PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112413.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 279aa MW: 32154.8 Da PI: 9.2327

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.9	2.9e-47	8	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPt+eel ++yLk+ v+gk ++ evi ++iy+++PwdLp+ k +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s XP_009112413.1 8 PGFRFHPTEEELTDYYLKNMVNGKFSKV-EVIGFLNIYRHDPWDLPRLSKIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLse 101 9*********************9999.99***********8778899*********************************98755 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++glkktLvfy+grap g+ktdWvm+eyr+ XP_009112413.1 102 PKRVIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134 7778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.553	6	152	IPR003441	NAC domain
SuperFamily	SSF101941	5.75E-55	7	152	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSREIELPGF RFHPTEEELT DYYLKNMVNG KFSKVEVIGF LNIYRHDPWD LPRLSKIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP 120 GGSKTDWVMN EYRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMESKMN QTSPNSPLSS 180 SETISYVGKE ENLMMTSFPF PQASAMQEAN NNFMLQGHEE KQREAEPKES SSSLKLPCGV 240 LPLPELQLPK QGLEWGQDQF LSISPWLQNL TPIVNLLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-45	8	155	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-45	8	155	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-45	8	155	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-45	8	155	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-44	8	155	22	171	NAC domain-containing protein 19
3swm_B	1e-44	8	155	22	171	NAC domain-containing protein 19
3swm_C	1e-44	8	155	22	171	NAC domain-containing protein 19
3swm_D	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_A	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_B	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_C	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_D	1e-44	8	155	22	171	NAC domain-containing protein 19
4dul_A	8e-45	8	155	19	168	NAC domain-containing protein 19
4dul_B	8e-45	8	155	19	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.22505	0.0	leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112413.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353307	0.0	AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112413.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	6e-90	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A397XSH7	0.0	A0A397XSH7_BRACM; Uncharacterized protein
TrEMBL	M4F872	0.0	M4F872_BRARP; Uncharacterized protein
STRING	Bra037283.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-169	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]