PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112448.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 184aa    MW: 21325.1 Da    PI: 10.1328
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.4e-09108164454
                     XCHHHCHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKka......eieeLeekvkeLeaeNkaLkkeleelkk 54 
                     ++r +r+ kNRe+A rsR+RK++      +i eLe ++  L++eN++Lk + ++lk 
  XP_009112448.1 108 DRRHKRMTKNRESAARSRARKQElltilsYINELELEIVHLQKENTRLKRQEKQLKM 164
                     799*******************86666668899999999999999999988888874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-10100164No hitNo description
SMARTSM003385.0E-5105171IPR004827Basic-leucine zipper domain
PfamPF001702.4E-7108163IPR004827Basic-leucine zipper domain
CDDcd147077.90E-22109169No hitNo description
SuperFamilySSF579599.38E-7109162No hitNo description
PROSITE patternPS000360112127IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTQVTMEEVW KEINLASLHP HRQLNIDHEP VLSNQNPNKS IFQDFLNKPL NQEPPPSSSS  60
THHVSLLAPP ATVISLNTHS IDTHFDESAM FGCFGKKRGQ DSDESRGDRR HKRMTKNRES  120
AARSRARKQE LLTILSYINE LELEIVHLQK ENTRLKRQEK QLKMAEATQH QTKKILQRSW  180
TSPF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510521.11e-128PREDICTED: bZIP transcription factor 27-like isoform X1
SwissprotQ7PCC62e-78FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A3P5Y6441e-122A0A3P5Y644_BRACM; Uncharacterized protein
STRINGBo9g024710.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.23e-79basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]