PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112489.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 202aa    MW: 22342.3 Da    PI: 7.3037
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.6e-2090124135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  XP_009112489.1  90 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 124
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.5E-1984136IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.46884120IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-1384123No hitNo description
Gene3DG3DSA:3.30.50.106.2E-1788124IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.27E-1389121No hitNo description
PROSITE patternPS00344090115IPR000679Zinc finger, GATA-type
PfamPF003201.7E-1790124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMGYKTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDEHH RFSSANSNNI  60
SGDFFFHGGS PKTTTSYKKS GSEHNLPRRC ASCDTTSTPL WRNGPKGPKS LCNACGIRFK  120
KEERRAAARN SITSGGGSSV AEVPAENLYN GGGNYYTHHH YASSSPSWAH QNTQRVQYFS  180
PAPEMEYPFV DDVTAASFLS WN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112489.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112489.11e-151PREDICTED: GATA transcription factor 20
SwissprotQ9ZPX01e-107GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A397Y0J41e-149A0A397Y0J4_BRACM; Uncharacterized protein
STRINGBo9g026020.11e-133(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-105GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]