PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112503.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 248aa    MW: 28131 Da    PI: 5.3192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1517931195
                    HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    + ++ +++p +f+++h +  k+++k+ +l++  s ++Wev    ++++    lt+GWk+F  a++L+ gD++vFk++g++ f  +v+
  XP_009112503.1 17 F-HNGVTIPLSFFSQHiQ-GKTNGKKWKLRSdASDQTWEVIQ--EGRR----LTGGWKDFTTAHDLRIGDILVFKHEGDMVF--HVT 93
                    3.5569**********64.4567889999987899*****99..8887....***********************9999988..766 PP
2B356.83.9e-18130223498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++++ +++ l+l  + ++   ++k + k+++l +++g+sW+  l+y+  +++++++kGW+eF+++n    gD +vF ++g+ ++++++ v+ 
  XP_009112503.1 130 AEVTASNINEDKLYLLVEATTCTALNK-QLKEIILVNKEGNSWTASLRYSEADDMFYIRKGWREFCEENICTIGDLFVFNVVGDGNTTPLMCVCP 223
                     567888888999999999884447776.668*****************************************************99999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.47E-203104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-213100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.012698IPR003340B3 DNA binding domain
CDDcd100171.85E-15795No hitNo description
SMARTSM010199.6E-20998IPR003340B3 DNA binding domain
PfamPF023621.2E-101890IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-15127216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-14127216IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-15128225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294128225IPR003340B3 DNA binding domain
PfamPF023623.8E-17130223IPR003340B3 DNA binding domain
CDDcd100172.67E-9154223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGNPQEPHFL KPLLPGFHNG VTIPLSFFSQ HIQGKTNGKK WKLRSDASDQ TWEVIQEGRR  60
LTGGWKDFTT AHDLRIGDIL VFKHEGDMVF HVTPFGPSCC EIQFTHPHSI KEEADVDDTH  120
SFSFDYCFLA EVTASNINED KLYLLVEATT CTALNKQLKE IILVNKEGNS WTASLRYSEA  180
DDMFYIRKGW REFCEENICT IGDLFVFNVV GDGNTTPLMC VCPERKECSE LLIKHLSIMN  240
GDLLLAHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325500.0AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709561.11e-174B3 domain-containing protein REM8-like
TrEMBLM4F8200.0M4F820_BRARP; Uncharacterized protein
STRINGBra037231.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-62B3 family protein