PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112535.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 930aa    MW: 104161 Da    PI: 5.4998
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11811.4e-56201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL+n++k+++++e++t+p sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n++fqr
  XP_009112535.1  20 SEaRNRWLRPPEICEILQNYQKFQISSEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGHDNENFQR 114
                     4449******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+L+eel++iv+vhylevk
  XP_009112535.1 115 RSYWMLQEELSHIVFVHYLEVK 136
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.10815141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8318136IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4921135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.9E-13373458IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.3E-14529659IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.937535656IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-14543659IPR020683Ankyrin repeat-containing domain
CDDcd002044.00E-10544656No hitNo description
PROSITE profilePS500888.79597629IPR002110Ankyrin repeat
SuperFamilySSF525403.45E-8747801IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92750772IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.974752778IPR000048IQ motif, EF-hand binding site
PfamPF006120.0037753771IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0054773795IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432774798IPR000048IQ motif, EF-hand binding site
PfamPF006126.9E-4776795IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MAEARRFSPN NELDVGHILS EARNRWLRPP EICEILQNYQ KFQISSEPPT TPASGSVFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGHDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRI STSYNRMQRT AEDSAQFSHE TGEVFTSERD GYASGSINQY  180
DHNNHPQATD SANVNGAHTP ELEDAESAYN QQGSSIVYSH QQPPSTGFDP LYQMSLTPRT  240
INGPGVTNGL RNKKSIDSQT WEEILGNCGS GAEGLLPLQP NSEHEVLDQI LQDSSFTMQA  300
PYLSTKKQHL LDGALGEEGL KKVDSFSRWM SKELGDVCVI ADANESFTHS SSTAYLDGYV  360
MSPSLSKEQL FSIIDFAPNW TYVGCEVNVL VTGKFLKTPE EAEREEWCCM FGQTEAPADV  420
IADGILQCVA PMREAGRVPF YITCSNRLAC SEVREFEYKV LESQAFGRET DDSTESLEAR  480
FVKLLCSKSD SPSSNGSDMS QVSEKISLLL FENDDQLDQM LMNEISQESM KEKLLQEALK  540
ESLHSWLLQK IAEGGKGPNV LDEGGQGILH FAAALGYNWA LEPTVVAGVS VDFRDVTGWT  600
ALHWAAFFGR ELVIGSLIAL GASPGTLTDP NPDFPSGSTP SDLAYANGFK GIAGYLSEYA  660
LTAHVSLLSL NESNAETSES TTPSPSSSSL TDSLTAVRNA TQAAARIHQV FRAQSFQKKQ  720
MKEFGVSEER ALSMLAPKTH KQGRAHSDDS VQAAAIRIQN KFRGYKGRKD YLITRQRIIR  780
IQAHVRGYQV RKNYRKIIWS VGILEKVILR WRRKGAGLRG FKSDALVDKM QDGTGREEDD  840
DFFKQGRKQT EERLQKALAR VKSMAQYPEA RDQYRRLLNV VNDIQESKVE KALESSEEAT  900
CFDDDLIDIE ALLGDDDTLM LPMSSTLWNT
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112535.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112535.10.0PREDICTED: calmodulin-binding transcription activator 3-like isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLM4FBR80.0M4FBR8_BRARP; Uncharacterized protein
STRINGBra038534.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]