PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009112659.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 329aa MW: 37120.7 Da PI: 5.516

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009112659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.6e-32	163	217	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG ++A Pk++l++mkv+gLt++hvkSHLQkYR+ XP_009112659.1 163 KGRMRWTPELHEAFVEAVNHLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 217 56****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.134	160	220	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-29	162	218	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.65E-17	162	217	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-23	163	217	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-10	165	216	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-21	249	293	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
METRNLAHTC SSIPPPDIPF NSQQHNHLLS EAAGHIYSND LPNAAAASMV SHEQQHIGST 60 DTPFIPEILD WDHHLLDLPL DFSPIQMEEE DGGILPSDEN PIMSPYWNDL ILDTSSTSAS 120 KVHESTMQPQ VPLQQPPSPC VELPPLVRTV SSNSNDNTSA AAKGRMRWTP ELHEAFVEAV 180 NHLGGMNNAK PKAVLKHMKV QGLTIYHVKS HLQKYRTARY VPEPSQGSQE TKLTPLEHVT 240 SLDTKRGIDI TEALRIQMEV QKQLHEQLEV QRKMQLRIEE QGKVLLMMFE KQNMDFCKPD 300 QEDKTSEKTP ESCSEEADSP RPKRPRNNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-27	162	220	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009112659.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112659.1	0.0	PREDICTED: myb family transcription factor PHL4-like isoform X2
Swissprot	Q8GXC2	1e-104	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	M4F6G9	0.0	M4F6G9_BRARP; Uncharacterized protein
STRING	Bra036679.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-98	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]