PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112780.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 341aa    MW: 37617.5 Da    PI: 8.5854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.71.3e-051674955
                    HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                      +++e+e++ ++  +  p +++ e LA+k            ++ +q+ +WFqNrR+  
  XP_009112780.1 16 LAEVTEMEAVLKQhnTAMPGRDTLEALADKFsdtverkgktVVQFKQIWNWFQNRRYAL 74
                    556677777777544778999999999999999999999888999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-9477IPR009057Homeodomain-like
PROSITE profilePS500718.584577IPR001356Homeobox domain
SMARTSM003890.0033781IPR001356Homeobox domain
CDDcd000866.02E-41375No hitNo description
Gene3DG3DSA:1.10.10.603.9E-71378IPR009057Homeodomain-like
PfamPF167195.5E-41138266IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNLAEVT EMEAVLKQHN TAMPGRDTLE ALADKFSDTV ERKGKTVVQF  60
KQIWNWFQNR RYALRASRNK VPGKLNVSSM PRSVDPTNPM RNVLPPSTGP KPPHMIGNLS  120
GMTPAPPGVM RSGSDNSYLE FEAKSARDGA WYDVQAFLAH RNLEIGDPEV QVRFAGFEVE  180
EDEWINVKRH VRQRSLPCEA SECVAVLAGD LVLCFQEGKD QALYFDATVL DAQRRRHDVR  240
GCRCRFLVRY SHDQSEQEIV PLRKICRRPE TDYRLQQLHS AANDFANSKP APDAAAKTPL  300
PPSTASVPIV PPDVKDPSLS AASATSAQPS SNAATVPAGS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-451392704134SHH1 SAWADEE
4iur_B3e-451392704134SHH1 SAWADEE
4iut_A3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-451392704134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.83090.0flower
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112780.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X3
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A078G0K40.0A0A078G0K4_BRANA; BnaA01g26780D protein
STRINGBra037587.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding