PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112792.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 187aa    MW: 21159.8 Da    PI: 7.2345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32105163159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dpkvv++tYeg Hnh+
  XP_009112792.1 105 LDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPKVVVTTYEGVHNHP 163
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-3392163IPR003657WRKY domain
SuperFamilySSF1182902.35E-2897164IPR003657WRKY domain
PROSITE profilePS5081129.746100165IPR003657WRKY domain
SMARTSM007743.0E-38105164IPR003657WRKY domain
PfamPF031063.1E-26106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEGIDNTHSM LTLEEGENNP FSSFDDKQLM MMMVPSLMFS GDMGTSSCSP ASFHMSSQPE  60
NFQGGGGGEA MEMEGLNDHN NKGKGKRSSA LQRIAFHTRS DDDVLDDGYR WRKYGQKSVK  120
NNAHPRSYYR CTYHTCNVKK QVQRLAKDPK VVVTTYEGVH NHPCEKLMET LSPLLRQLQF  180
LTRVSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2795162774Probable WRKY transcription factor 4
2lex_A3e-2795162774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300630.0KF430063.1 Brassica rapa WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112792.11e-141PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ41e-102WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A397Y1E61e-140A0A397Y1E6_BRACM; Uncharacterized protein
TrEMBLM4EG551e-140M4EG55_BRARP; Uncharacterized protein
STRINGBra027768.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-104WRKY DNA-binding protein 56