PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009112988.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 185aa    MW: 20810.6 Da    PI: 5.4029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009112988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-152978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +    +Wv+e+r+p        +r++lg++ tae+Aa+a++ a ++l+g
  XP_009112988.1 29 IYRGVRSRN-GDKWVCEVREP-----IhqRRVWLGTYPTAEMAARAHDVAVLALRG 78
                    69***9666.99*****9997.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-102878IPR001471AP2/ERF domain
CDDcd000181.09E-252888No hitNo description
SuperFamilySSF541719.15E-202988IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-282988IPR001471AP2/ERF domain
PROSITE profilePS5103221.4432986IPR001471AP2/ERF domain
SMARTSM003802.7E-242992IPR001471AP2/ERF domain
PRINTSPR003671.5E-73041IPR001471AP2/ERF domain
PRINTSPR003671.5E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MENNNNVLAE MKPKKRAGRK IFKETRHPIY RGVRSRNGDK WVCEVREPIH QRRVWLGTYP  60
TAEMAARAHD VAVLALRGRS ACLNFSDSAW RLPAAESTDP DTIRRTAAEA AEMFRPPEFS  120
TGITVLPSSG GGELDTVEEG EGVAGMMMRL AEEPLMSPPR AYVDMNTSVY VEEEMGYEEL  180
SLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009112988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135930.0KJ013593.1 Brassica rapa subsp. chinensis CBF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112988.11e-135PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ61e-115DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A078IEC91e-134A0A078IEC9_BRANA; BnaA09g10730D protein
TrEMBLA0A397XY931e-134A0A397XY93_BRACM; Uncharacterized protein
TrEMBLM4EFQ01e-134M4EFQ0_BRARP; Uncharacterized protein
STRINGBra027612.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-117ERF family protein