PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113022.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 640aa    MW: 71493.2 Da    PI: 7.9265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.81.9e-1272666341373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL+ c ea+++++ +++++++ar  elasp+g +pm+Rl+ay+teALa r+ar++++++++ pp++ +    +e+++al+++++v+Pi+kf 
  XP_009113022.1 266 LVNLLTGCLEAIRTRNIAAINHFIARSGELASPRGtTPMTRLIAYYTEALALRVARMWPHIFHITPPRDFE----DESANALRFLNQVTPIPKFI 356
                     6899*******************************99********************************96....89999*************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h taN+++l+a++g+ervHiiDfdi+qGlQWp+++q+LasRp +p ++RiTgvg+    sk+el+etg+rL+ fAe+++++fef++ v++rled+
  XP_009113022.1 357 HYTANSMLLRAFQGKERVHIIDFDIKQGLQWPSFFQSLASRPIPPRHVRITGVGE----SKHELNETGDRLHGFAEAMHLQFEFHP-VVDRLEDV 446
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gEa+aVn+v q+h++l + +  +   +++  lv+s++P  vv++eqea+hns+++ +r++++l+yysa fd +++ l+++s  r+k
  XP_009113022.1 447 RLWMLHVKEGEAVAVNCVSQMHKTLYDGTGAAV--RDFAGLVRSTNPVAVVIAEQEAEHNSTQLETRVFNSLKYYSAGFDVMHKRLGADSLMRVK 539
                     ************************977766666..89********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg..yrve...eesgslvlgWkdrpLvsvSaW 373
                     +E++l+grei+n+vaceg++r+erh  +++Wr+++e+ GF+++ +se+++ q k+llr+++ +d+  ++ve   e+ g ++l W d+pL++vSaW
  XP_009113022.1 540 IEEVLFGREIRNIVACEGSHRQERHVGFGEWRRMMEQLGFRSLGVSEREVLQSKMLLRMYGdGDEefFNVErsdEDGGGVTLRWLDQPLYTVSAW 634
                     *************************************************************6555889**97766678888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.648240609IPR005202Transcription factor GRAS
PfamPF035146.6E-125266634IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAAAAATSS AVSVHFPMNT QRLDLPCSSS NFPRKETPTN  60
RPLGRSISLD NTNNNNKAGG CSIKQSIKLT PLATTRGNAD GFSWNNDNNN RGRKRLMRLA  120
ADKEDESCLS RVKRQRGETG DEHNMGFWFD HFTPASLPFS LTCSGDNDEK LISTQPLPGH  180
PHWVNSVITE LAGLGDKDIE SSRPASGSST SASAESHSFR HRVPVPTNGS RHPYSQHGGG  240
STERRTIENI NNNNNHRNDT QRDLELVNLL TGCLEAIRTR NIAAINHFIA RSGELASPRG  300
TTPMTRLIAY YTEALALRVA RMWPHIFHIT PPRDFEDESA NALRFLNQVT PIPKFIHYTA  360
NSMLLRAFQG KERVHIIDFD IKQGLQWPSF FQSLASRPIP PRHVRITGVG ESKHELNETG  420
DRLHGFAEAM HLQFEFHPVV DRLEDVRLWM LHVKEGEAVA VNCVSQMHKT LYDGTGAAVR  480
DFAGLVRSTN PVAVVIAEQE AEHNSTQLET RVFNSLKYYS AGFDVMHKRL GADSLMRVKI  540
EEVLFGREIR NIVACEGSHR QERHVGFGEW RRMMEQLGFR SLGVSEREVL QSKMLLRMYG  600
DGDEEFFNVE RSDEDGGGVT LRWLDQPLYT VSAWSGGGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6327363526379Protein SCARECROW
5b3h_A3e-6327363525378Protein SCARECROW
5b3h_D3e-6327363525378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118GRKRLMRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113022.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM4EDY90.0M4EDY9_BRARP; Uncharacterized protein
STRINGBra026999.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein