PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113026.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 248aa    MW: 26267.4 Da    PI: 4.6153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1683131255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  XP_009113026.1  83 IYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYTTPEMAAAAYDVAALALKG 131
                     69***9.55.6*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-982131IPR001471AP2/ERF domain
CDDcd000184.32E-1882141No hitNo description
SMARTSM003806.5E-3083145IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1883141IPR016177DNA-binding domain
PROSITE profilePS5103219.96883139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2783141IPR001471AP2/ERF domain
PRINTSPR003679.6E-78495IPR001471AP2/ERF domain
PRINTSPR003679.6E-7121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MADHKDPYTE PKPISQASSS SVTIVPAHTC GYSLSESSTC EYSCPLATVS FAAASSTTSS  60
NDNVTLMATT EAGPTPRRKK HPIYRGIRCR SGKWVSEIRE PKKTTRVWLG TYTTPEMAAA  120
AYDVAALALK GREAVLNFPE SVGSYPLPVS SSAAHIRMAA ATAAATVGAE AAAAAANAAV  180
KEGEKEVEEV AEVVGSSAME FVDEEELLNM HGLLEEMAKG MMVAPPWMGS PPSDDSPENS  240
QEESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13811391272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113026.10.0PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_013659340.10.0ethylene-responsive transcription factor ERF026-like
RefseqXP_013716597.10.0ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN92e-87ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A3P5Y7541e-180A0A3P5Y754_BRACM; Uncharacterized protein
STRINGBo9g036590.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-50ERF family protein