PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113245.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 308aa    MW: 34587.8 Da    PI: 9.4441
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113245.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.81.7e-38105193297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +fqrlw+eeDei++LqG+idfk++tg sp+dd++a y+++k+sisf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hd+k++ l++ iW
  XP_009113245.1 105 AFQRLWTEEDEIAVLQGMIDFKNDTGNSPYDDTNAYYDYIKNSISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDHKSYRLCNYIW 192
                     69**************************************************************998776.......****************** PP

          DUF573  97 g 97 
                     g
  XP_009113245.1 193 G 193
                     9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-30106193IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTKKRDPLEN PPAASSSDDA SSSEEEELPV KAPSSSAAQQ ASDIDSGSET ETDSDTEQPP  60
NQRSGKAIVA SKKDKSGTKR PSEGTSRDTN SKRAKKIGED SKKPAFQRLW TEEDEIAVLQ  120
GMIDFKNDTG NSPYDDTNAY YDYIKNSISF EVSKNQFMDK LRSLKKKYMG KEKPSFTKPH  180
DHKSYRLCNY IWGPDGMGLD TAVKSNGVSK KKTKKLADDD GKRVLVRADE KSDWFGNSFL  240
VRGIAAFGVD EHYVKQRWSL VPVETKKRVE EKVKMLRAKE IEFLLQKAKI LHEVTSMIAE  300
ASKNKPFE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.84750.0bud| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113245.10.0PREDICTED: probable transcription factor At1g61730
SwissprotQ9SYA91e-110STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A397KYU40.0A0A397KYU4_BRACM; Uncharacterized protein
TrEMBLM4DXS10.0M4DXS1_BRARP; Uncharacterized protein
STRINGBra021317.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-96DNA-binding storekeeper protein-related transcriptional regulator