PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009113254.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 252aa MW: 28414.2 Da PI: 10.0767

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009113254.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	86.4	3.7e-27	59	144	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++r+w+eeDe+++L+Gl++++a++g +p++++ +fy+fv +si k+sk+q+++Kir+LK Kf +++k ++++ +++f lsk+iWg XP_009113254.1 59 SSRIWNEEDELTVLKGLVEYQAQKGNEPKSNWGDFYRFVGGSITGKFSKEQVLTKIRKLKAKFIANMQK---------ANTSKSEAFLLSKSIWG 144 78*******************************************************************.........66777889999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.2E-21	60	144	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMNLDFPDGT SPPSHIPRSR KSPRKNASKP SPPPPPPPEP ATEHVTNKKK KKKKALASSS 60 RIWNEEDELT VLKGLVEYQA QKGNEPKSNW GDFYRFVGGS ITGKFSKEQV LTKIRKLKAK 120 FIANMQKANT SKSEAFLLSK SIWGPQSESD QSADHTKSGE EMANHEPSNN EVTKADFEGN 180 EESWVVRDAF ETMVSKGLSD YQKKLQLEKL MNLGSGKRRE LSDEWKELCA EEVKLNIKKF 240 KFSAMLAEAA KW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	53	KKKKKKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the apical meristem and young leaf primordia (PubMed:12535344, PubMed:18162594). Not detected in emerging or mature leaves (PubMed:12535344). Detected in the vascular tissues of cotyledons and leaves, in hydathodes and at the base of flowers and siliques, but not in roots (PubMed:18162594). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:18162594}.

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009113254.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113254.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 2
Swissprot	Q9ASZ1	1e-55	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	A0A397L3R5	0.0	A0A397L3R5_BRACM; Uncharacterized protein
STRING	Bo6g064770.1	1e-161	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	6e-57	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]