PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113601.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 162aa    MW: 17716.6 Da    PI: 5.5832
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06446541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ +e+ e++  C +++  lC+ C  + H+       H +vp
  XP_009113601.1  4 QCEVCEKAEAEVLCCSDEAALCKPCDITVHEAnklfqrHHRVP 46
                    7*****************************7788999977776 PP
2zf-B_box20.69.1e-0773981538
        zf-B_box 15 qlfCedCqqllCedClleeH..kgHt 38
                     +fC d++ llC+dC  ++H  ++H+
  XP_009113601.1 73 YFFCLDDRALLCNDCDGAIHicNSHQ 98
                    69*****************8546687 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793147IPR000315B-box-type zinc finger
CDDcd000218.27E-7347No hitNo description
SMARTSM003365.4E-7447IPR000315B-box-type zinc finger
SMARTSM003360.02368102IPR000315B-box-type zinc finger
CDDcd000218.36E-469102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAALCKPCDI TVHEANKLFQ RHHRVPLQKP SSTTSSTAPL  60
XRFVSIISER KGYFFCLDDR ALLCNDCDGA IHICNSHQRF LLSGVQASDQ SLTKSSGCST  120
NLSSETYQIQ SKASLNSQYS SEENEAGNSG ETDKTPSVIL SP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113601.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533412e-95AK353341.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113601.11e-116PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 23
SwissprotO826172e-84BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A3P5Y0G41e-107A0A3P5Y0G4_BRACM; Uncharacterized protein
STRINGBo9g088220.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.19e-76DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]