PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113648.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family VOZ
Protein Properties Length: 475aa    MW: 53230.7 Da    PI: 5.3955
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ439.83.5e-1351974141217
             VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 
                     pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspwna+el
  XP_009113648.1 197 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPEL 291
                     89********************************************************************************************* PP

             VOZ  96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl. 189
                     fdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelkl 
  XP_009113648.1 292 FDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMNEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLv 386
                     *********************************************************************************************73 PP

             VOZ 190 vdekksakgkvskdsladlqkklgrlta 217
                     vd+kk++kgkvs+ds+adlqk++grlta
  XP_009113648.1 387 VDGKKNSKGKVSTDSVADLQKQMGRLTA 414
                     69************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009631Biological Processcold acclimation
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MTGKRSKITC RSTSHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR  60
EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTTDQNL  120
EAGKAAVFQR GYNLVQEKSE NEFPLADHGN NFDGTAHLDY NQYDLQQEFE PNFNGGFNEC  180
PTYGPLHISA FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP  240
GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE LFDLTVLESE  300
TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MNEFGGLKRS YYMDPQPLHH  360
FEWHLYEYEI NKCDACALYR LELKLVVDGK KNSKGKVSTD SVADLQKQMG RLTAEFPQEN  420
VNNKRCIKGR PKVNTKVAAT TTGNVQNTVV EQGNEYGVGE EFNYLVGNLT DYYLP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.216970.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113648.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1252560.0AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBankAK2270140.0AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBankAK3170060.0AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBankBT0202610.0BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113648.10.0PREDICTED: transcription factor VOZ1 isoform X1
RefseqXP_009113649.10.0PREDICTED: transcription factor VOZ1 isoform X1
RefseqXP_013718343.10.0transcription factor VOZ1-like isoform X1
RefseqXP_013718344.10.0transcription factor VOZ1-like isoform X1
RefseqXP_013718347.10.0transcription factor VOZ1-like isoform X1
RefseqXP_013718348.10.0transcription factor VOZ1-like isoform X1
SwissprotQ9SGQ00.0VOZ1_ARATH; Transcription factor VOZ1
TrEMBLM4EVT00.0M4EVT0_BRARP; Uncharacterized protein
STRINGBra032913.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.20.0vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  3. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]