PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009113650.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

VOZ

Protein Properties

Length: 473aa MW: 52973.5 Da PI: 5.5393

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009113650.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	439.8	3.5e-135	195	412	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspwna+el XP_009113650.1 195 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPEL 289 89******************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl. 189 fdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m+efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelkl XP_009113650.1 290 FDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMNEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLv 384 *****************************************************************************************73 PP VOZ 190 vdekksakgkvskdsladlqkklgrlta 217 vd+kk++kgkvs+ds+adlqk++grlta XP_009113650.1 385 VDGKKNSKGKVSTDSVADLQKQMGRLTA 412 69**********************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MTGKRSKITC RSTSHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR 60 EWKSELNEPS PASSLQQGGT LGSFSTDICR LLQLCDEEDD ATSKLAPPKP EPTTDQNLEA 120 GKAAVFQRGY NLVQEKSENE FPLADHGNNF DGTAHLDYNQ YDLQQEFEPN FNGGFNECPT 180 YGPLHISAFI PTICPPPSAF LGPKCALWDC PRPAQGFDWF QDYCSSFHAA LAFNEGPPGM 240 NPVVRPGGIG LKDGLLFAAL SAKAGGKDVG IPECEGAATA KSPWNAPELF DLTVLESETL 300 REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQIMN EFGGLKRSYY MDPQPLHHFE 360 WHLYEYEINK CDACALYRLE LKLVVDGKKN SKGKVSTDSV ADLQKQMGRL TAEFPQENVN 420 NKRCIKGRPK VNTKVAATTT GNVQNTVVEQ GNEYGVGEEF NYLVGNLTDY YLP

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MTGKRSKITC RSTSHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR  60
EWKSELNEPS PASSLQQGGT LGSFSTDICR LLQLCDEEDD ATSKLAPPKP EPTTDQNLEA  120
GKAAVFQRGY NLVQEKSENE FPLADHGNNF DGTAHLDYNQ YDLQQEFEPN FNGGFNECPT  180
YGPLHISAFI PTICPPPSAF LGPKCALWDC PRPAQGFDWF QDYCSSFHAA LAFNEGPPGM  240
NPVVRPGGIG LKDGLLFAAL SAKAGGKDVG IPECEGAATA KSPWNAPELF DLTVLESETL  300
REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQIMN EFGGLKRSYY MDPQPLHHFE  360
WHLYEYEINK CDACALYRLE LKLVVDGKKN SKGKVSTDSV ADLQKQMGRL TAEFPQENVN  420
NKRCIKGRPK VNTKVAATTT GNVQNTVVEQ GNEYGVGEEF NYLVGNLTDY YLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.21697	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009113650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125256	0.0	AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBank	AK227014	0.0	AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBank	AK317006	0.0	AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBank	BT020261	0.0	BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113650.1	0.0	PREDICTED: transcription factor VOZ1 isoform X2
Refseq	XP_013718345.1	0.0	transcription factor VOZ1-like isoform X2
Refseq	XP_013718349.1	0.0	transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A397Y6N4	0.0	A0A397Y6N4_BRACM; Uncharacterized protein
STRING	Bra032913.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]