PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009113663.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 1650aa MW: 184998 Da PI: 4.9938

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009113663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	40	95	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le+++ ++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk XP_009113663.1 40 PKRQMKTPFQLQTLEQVYSEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 95 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-17	19	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.65E-16	31	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	36	96	IPR001356	Homeobox domain
SMART	SM00389	7.8E-18	38	100	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-16	40	95	IPR001356	Homeobox domain
CDD	cd00086	4.31E-14	41	95	No hit	No description
SMART	SM00571	1.6E-23	525	584	IPR018501	DDT domain
PROSITE profile	PS50827	17.838	525	584	IPR018501	DDT domain
Pfam	PF02791	1.3E-18	526	581	IPR018501	DDT domain
Pfam	PF05066	4.1E-15	707	774	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.9E-7	904	946	IPR028942	WHIM1 domain
Pfam	PF15613	3.8E-13	1055	1127	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1650 aa Download sequence Send to blast
MESDGEENQM RSVADSNHKN KKMKKVVDAS NSKDSPSSKP KRQMKTPFQL QTLEQVYSEE 60 TYPSEATRAE LSEKLDLSDR QLQMWFCHRR LKDKKDGQVK KTPKPAPVQP ASAVPALSLP 120 AAELDSGSDS GSGSGSGCSP YSEPRREFAS GSSNSRAEYE TMGSAGYEQP PPRSSVMVRR 180 AVACIEAQLG EPLRDDGPTL GMEFDPLPPG AFGTPIAMQT HQGHPYESKI YEPLDVRPRR 240 SQAATSAFHE QQSLNDPSSF TPDMYGRYSE SHSRGVDYEI SRPRSSSFMQ GNGPLPKSYG 300 NSSRNCSTSQ QDMPSPILPS ARGDSFLLER DSSGLRAEDP YLLSDGINDG RLGRGSGQKD 360 LEKLELQRKR NEERMRKEME RYERERRKEE ERLMRERIKE EERLQREQRR EMERREKFLQ 420 RENERAEKNK QKEEIRREKE AIRRKIAVEK ATARRIAKEA MDLIEDEQLE LMDLAASSKG 480 LSSVIQLDHD TLQNLDLYRD SLSTFPPKAL QLKMPFTISP WKDSKENVGN LLMVWRFLIS 540 FSDVLDLWPF TLDEFIQALH EYDSRLLGEI HITLLRSIIR DIEDVARTPY SGIGNNQYTT 600 ANPEGGHPQI VEGAYAWGFD IRSWKKHLNP LTWPEILRQL GLSSGFGPRL KKSNSRVTHT 660 GEKDEAKGCE DIISTLRSGS AAESAFASML EKGLLAPRKS RHRLTPGTVK FAAFHVLSLE 720 GSKGLTVIEL ADKIQKSGLR DLRTSKTPEA SISVALTRDV KLFERIAPST YCVRAPYVKD 780 PADGEAILAE ARKKIKAFEN GLAGPEDVND LEKDEDFECD IDEDPEVDDL ATLPSASKSA 840 DLGDANGLSE KGGEIMFSDV KADVKSEVEK GVSSPPTSSM KSIVPQCHSE QRKDNAVVED 900 SKQGKSWVLG LTEGEYCHLS VEERLEALVA LVGIANEGNS IRASLEDRLE AANSLKKQMW 960 AEAQLDNSCM RDVLKFDIQN STREINSFNR DPSQLVDETK PPLEVVSNDV HKLSTERGSV 1020 NQEGNISQEN FSSKRSRSQL KSYISHKAEE VYPYRSLPLG QDRRHNRYWH FAASASKSDP 1080 CSGLIFVELH DSKWRLIDSA EAFDTLVASL DMRGVRESHL RIMLQKIEGA FKENASKNIN 1140 LARNPSLKED SVSPSSAILG LSSDSMGAST SIRVELGRDD KEKENFLKRF HAFQRWMWTE 1200 TYSSVPSCAR KDGKKRCELL ATCEVCIASY LSEYTHCTSC HQRLDMADGS ERKIVDSGLT 1260 ASPLPFGVRL LKALLVFLEA SVPDEAFESF WTEEKRKNWG LKLNASSSPE ELSQVLTYLE 1320 SAIKKESLSS NFLSAKELLG AAGADDQESM DVFPWIPKTV SAVALRLSDL DASIVYVKPE 1380 KPEPVPEDEN EQISLFPGNS LLKGKGPKEQ EDQDEVVPNS GKKSNKRRVI FGSGSNKKAK 1440 KKKVQGGNGR FVAGRSNVAA SRNIMSVELN HQVPGRGKRT VRKRPERNDE DNYRLVSRMA 1500 DIVKPTSEED EEEEEEQTFR GIDEDWAGET PREMDEEWAS ETPNRVMTPM QVDGESDDNS 1560 VGVQSEDDDD DEGQFVSYSQ RNKWGFDWNS NPNEAMEDVE EEVAGVEQVQ REYVAEMSES 1620 SEDDDVPAAN NNAAANNYDR ESEDYSSSDS

Sequence ? help Back to Top

Protein Sequence Length: 1650 aa Download sequence Send to blast

MESDGEENQM RSVADSNHKN KKMKKVVDAS NSKDSPSSKP KRQMKTPFQL QTLEQVYSEE  60
TYPSEATRAE LSEKLDLSDR QLQMWFCHRR LKDKKDGQVK KTPKPAPVQP ASAVPALSLP  120
AAELDSGSDS GSGSGSGCSP YSEPRREFAS GSSNSRAEYE TMGSAGYEQP PPRSSVMVRR  180
AVACIEAQLG EPLRDDGPTL GMEFDPLPPG AFGTPIAMQT HQGHPYESKI YEPLDVRPRR  240
SQAATSAFHE QQSLNDPSSF TPDMYGRYSE SHSRGVDYEI SRPRSSSFMQ GNGPLPKSYG  300
NSSRNCSTSQ QDMPSPILPS ARGDSFLLER DSSGLRAEDP YLLSDGINDG RLGRGSGQKD  360
LEKLELQRKR NEERMRKEME RYERERRKEE ERLMRERIKE EERLQREQRR EMERREKFLQ  420
RENERAEKNK QKEEIRREKE AIRRKIAVEK ATARRIAKEA MDLIEDEQLE LMDLAASSKG  480
LSSVIQLDHD TLQNLDLYRD SLSTFPPKAL QLKMPFTISP WKDSKENVGN LLMVWRFLIS  540
FSDVLDLWPF TLDEFIQALH EYDSRLLGEI HITLLRSIIR DIEDVARTPY SGIGNNQYTT  600
ANPEGGHPQI VEGAYAWGFD IRSWKKHLNP LTWPEILRQL GLSSGFGPRL KKSNSRVTHT  660
GEKDEAKGCE DIISTLRSGS AAESAFASML EKGLLAPRKS RHRLTPGTVK FAAFHVLSLE  720
GSKGLTVIEL ADKIQKSGLR DLRTSKTPEA SISVALTRDV KLFERIAPST YCVRAPYVKD  780
PADGEAILAE ARKKIKAFEN GLAGPEDVND LEKDEDFECD IDEDPEVDDL ATLPSASKSA  840
DLGDANGLSE KGGEIMFSDV KADVKSEVEK GVSSPPTSSM KSIVPQCHSE QRKDNAVVED  900
SKQGKSWVLG LTEGEYCHLS VEERLEALVA LVGIANEGNS IRASLEDRLE AANSLKKQMW  960
AEAQLDNSCM RDVLKFDIQN STREINSFNR DPSQLVDETK PPLEVVSNDV HKLSTERGSV  1020
NQEGNISQEN FSSKRSRSQL KSYISHKAEE VYPYRSLPLG QDRRHNRYWH FAASASKSDP  1080
CSGLIFVELH DSKWRLIDSA EAFDTLVASL DMRGVRESHL RIMLQKIEGA FKENASKNIN  1140
LARNPSLKED SVSPSSAILG LSSDSMGAST SIRVELGRDD KEKENFLKRF HAFQRWMWTE  1200
TYSSVPSCAR KDGKKRCELL ATCEVCIASY LSEYTHCTSC HQRLDMADGS ERKIVDSGLT  1260
ASPLPFGVRL LKALLVFLEA SVPDEAFESF WTEEKRKNWG LKLNASSSPE ELSQVLTYLE  1320
SAIKKESLSS NFLSAKELLG AAGADDQESM DVFPWIPKTV SAVALRLSDL DASIVYVKPE  1380
KPEPVPEDEN EQISLFPGNS LLKGKGPKEQ EDQDEVVPNS GKKSNKRRVI FGSGSNKKAK  1440
KKKVQGGNGR FVAGRSNVAA SRNIMSVELN HQVPGRGKRT VRKRPERNDE DNYRLVSRMA  1500
DIVKPTSEED EEEEEEQTFR GIDEDWAGET PREMDEEWAS ETPNRVMTPM QVDGESDDNS  1560
VGVQSEDDDD DEGQFVSYSQ RNKWGFDWNS NPNEAMEDVE EEVAGVEQVQ REYVAEMSES  1620
SEDDDVPAAN NNAAANNYDR ESEDYSSSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	95	RRLKDKKD
2	1425	1442	KRRVIFGSGSNKKAKKKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009113663.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113663.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	M4EVS5	0.0	M4EVS5_BRARP; Uncharacterized protein
STRING	Bra032908.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1