PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009113983.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 245aa MW: 28483.3 Da PI: 5.8153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009113983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.3e-10	85	133	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+r h + Er RR + ++++ L +llP a +K++K +i+ekAv+ I +L XP_009113983.1 85 RCRQHMMKERTRRMKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDQIGQL 133 6889************************.....9***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-11	80	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.00E-7	82	133	No hit	No description
PROSITE profile	PS50888	12.252	84	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	85	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-7	87	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDNFFLDSIL EEEDIFWDLI AGDVSGNADN TVSVVNRSAF RSYERNTEQT MVSSSSSVNV 60 NKRMLNLLRK IWEEKKNALA PENERCRQHM MKERTRRMKQ KQSYLALHSL LPFATKNDKN 120 SIVEKAVDQI GQLDEYKKEL ERRMNVLEAK SATDHDKMTG TKIRFSLQEP LSGIDSMVEI 180 LQCLKSMGTK LKTVQANFSP HEFSATMNIE TQIRGEEVEE RVERRLQETE WKLLVLPEAS 240 RIEDY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009113983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113983.1	0.0	PREDICTED: transcription factor bHLH92-like
Swissprot	Q9FIX5	1e-121	BH092_ARATH; Transcription factor bHLH92
TrEMBL	M4EFD9	0.0	M4EFD9_BRARP; Uncharacterized protein
STRING	Bra027501.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-110	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]