PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009113987.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 132aa MW: 14539.9 Da PI: 8.8208

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009113987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.3	2.9e-21	15	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g XP_009113987.1 15 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEEAARAYDQAAYSMRG 65 8******.******65443..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.3E-16	15	65	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.026	15	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-24	15	75	IPR016177	DNA-binding domain
CDD	cd00018	3.92E-26	15	74	No hit	No description
SMART	SM00380	1.1E-35	15	79	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-32	15	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-12	16	27	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-12	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0010186	Biological Process	positive regulation of cellular defense response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0090332	Biological Process	stomatal closure
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MEQGGRGSGG GEQGKYRGVR RRPWGKYAAE IRDSRKHGER VWLGTFDTAE EAARAYDQAA 60 YSMRGQAAIL NFPHEYNMGS GGAATVAGSS SSSASSSRQV FEFEYLDDSV LEELLEDREN 120 PNKNNINKGK KK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-58	1	132	1	131	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	10	GGRGSGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00029	PBM	Transfer from AT5G43410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009113987.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009113987.1	6e-93	PREDICTED: ethylene-responsive transcription factor ERF096
Refseq	XP_013740952.1	6e-93	ethylene-responsive transcription factor ERF096
Swissprot	Q9LSX0	5e-58	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A078H4Y5	1e-91	A0A078H4Y5_BRANA; BnaA09g16520D protein
TrEMBL	A0A397XUP1	1e-91	A0A397XUP1_BRACM; Uncharacterized protein
TrEMBL	M4EFD1	1e-91	M4EFD1_BRARP; Uncharacterized protein
STRING	Bra027493.1-P	2e-92	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	3e-29	ERF family protein

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]