PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114039.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 287aa    MW: 33119.2 Da    PI: 8.5534
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114039.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer81.21.2e-2559110357
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                     + rY eC+kN+Aas G++a+DGCgEf++++  e   +++ CaACgCHR+FHR+e+
  XP_009114039.1  59 EPRYGECRKNQAASAGTTAYDGCGEFVSANPGE---DSFDCAACGCHRSFHRKES 110
                     569*************************96555...9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015667.1E-2261109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-2061110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1462111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.91662109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.9E-23146216IPR009057Homeodomain-like
SuperFamilySSF466893.31E-13151215IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-29158214IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.601.1E-20217284IPR009057Homeodomain-like
SuperFamilySSF466898.6E-12222283IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27227284IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDETKSKIEE KCRRRTKATP ICRETGDHVH SPPTRITKST RPTHAPPPNL ESIFRLTPEP  60
RYGECRKNQA ASAGTTAYDG CGEFVSANPG EDSFDCAACG CHRSFHRKES LSDGILEVLK  120
ISPSQFRQIF CSPYGEAEEK KRIAMDKSPE EEEAARAKRL KTKFTAEQTE KMRSYAEKVG  180
WKLSSEGRER VREFCDGIGV TRKNLRVWMN NHKEANGRVD EEEEGRVKRF KTKFTAEQTE  240
RMRSYAEKLR WKVGPEDREE TEVFCNEIGV NRNNFMIWMN NHKEGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-122282831873ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114039.10.0PREDICTED: zinc-finger homeodomain protein 13
SwissprotQ9FMY72e-80ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLM4EF930.0M4EF93_BRARP; Uncharacterized protein
STRINGBra027455.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.17e-81homeobox protein 27