PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114126.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 174aa    MW: 20352.7 Da    PI: 7.6696
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.91.9e-1284141562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l + +++ +++ +e
  XP_009114126.1  84 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIEKLVRVSDTQDNVLKE 141
                     689*******************************************999998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-1080144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.34682145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-1184157No hitNo description
SuperFamilySSF579592.18E-1184131No hitNo description
PfamPF001701.5E-1084142IPR004827Basic-leucine zipper domain
CDDcd147021.53E-1685132No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTPAEITGYY QYLSPENLST IPAEFNILNM PSSPISSSSL NYLNDLIINN NYSLSSNGQD  60
LTMSNNSTSD EDHHHQRIKA LNERKQRRML SNRESARRSR MRKQRHLDEL WSQVIRLRNE  120
NNCLIEKLVR VSDTQDNVLK ENSKLKEEVS DLRQLVSELK PNKNNSFLRE FEEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00262DAPTransfer from AT2G04038Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114126.11e-123PREDICTED: basic leucine zipper 43-like
TrEMBLM4DLH81e-122M4DLH8_BRARP; Uncharacterized protein
STRINGBra017359.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.13e-62basic leucine-zipper 48