PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114228.1
Common NameRGA2
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 569aa    MW: 62297 Da    PI: 5.1606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.12.5e-1262145641374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                     lv++L++cAea++++dl+ a+al++++  la +++ +m+++a+yf+eALa+r++r        l+p +t+ ++  s++l++   f+e++P+lkf+
  XP_009114228.1 214 LVHALMACAEAIQNNDLSIAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR--------LSPPQTKIDHsLSDTLQM--HFYETCPYLKFA 298
                     689****************************************************........545555433314444444..5*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea+eg++rvHiiDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p++++++ l+e+g +La++Ae+++v+fe++ +va++l+dl
  XP_009114228.1 299 HFTANQAILEAFEGKKRVHIIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADL 393
                     *********************************************************************************************** PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     + ++L+++p   Ea+aVn+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s+++
  XP_009114228.1 394 DASMLELRPseIEAVAVNSVFELHKLLGRTGGIEK----VLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGV---PSSQD 481
                     ********98889**************99999999....*********************************************998...69999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++++lg++i+n+vaceg +r+erhetl++W +r++++GF p++l+             ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  XP_009114228.1 482 KVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGTSGFAPAHLGXAL----------FNgGEGYRVEENNGCLMLGWHTRPLITTSAWK 564
                     ***********************************************9754..........44478**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.0E-3945118No hitNo description
PfamPF120415.1E-3545112IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098561.208188553IPR005202Transcription factor GRAS
PfamPF035148.8E-124214564IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MKRDLHQFQG PPDTRFPNHG TANTGSSSKD KMMMVKEEED GGNMDELLAV LGYKVRSSEM  60
AEVALKLEQL ETMMGNVQED GLSNLATDTV HYNPSELYSW LDNMLTEFNP PPPEINNSFL  120
AGAGGSDYDL KAIPGNAIYA RSDQFAIDSS SSSNQAGDNS QSTKRLKSCS SPDSLFTGTT  180
VTTTTTESTR SVGLAAESTR SMVLVDSQEN GVRLVHALMA CAEAIQNNDL SIAEALVKQI  240
GFLAVSQAGA MRKVATYFAE ALARRIYRLS PPQTKIDHSL SDTLQMHFYE TCPYLKFAHF  300
TANQAILEAF EGKKRVHIID FSMNQGLQWP ALMQALALRE GGPPVFRLTG IGPPAADNSD  360
HLHEVGCKLA QLAEAIHVEF EYRGFVANSL ADLDASMLEL RPSEIEAVAV NSVFELHKLL  420
GRTGGIEKVL GVVKQIKPVI FTVVEQESSH NGPVFLDRFT ESLHYYSTLF DSLEGVPSSQ  480
DKVMSEVYLG KQICNLVACE GPDRVERHET LSQWANRFGT SGFAPAHLGX ALFNGGEGYR  540
VEENNGCLML GWHTRPLITT SAWKLSAAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5720956314378Protein SCARECROW
5b3h_A2e-5720956313377Protein SCARECROW
5b3h_D2e-5720956313377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.60210.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU5505190.0GU550519.1 Brassica napus DELLA protein (RGA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114228.10.0PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGA2-like
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A3P5YHG00.0A0A3P5YHG0_BRACM; Uncharacterized protein
STRINGBra017443.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Muangprom A,Thomas SG,Sun TP,Osborn TC
    A novel dwarfing mutation in a green revolution gene from Brassica rapa.
    Plant Physiol., 2005. 137(3): p. 931-8
    [PMID:15734906]