PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114236.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 22793.9 Da PI: 8.3519

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	63	116	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k XP_009114236.1 63 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARSK 116 66789***********************************************98 PP
2	HD-ZIP_I/II	119.1	2.3e-38	63	150	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++++Lkr++ +l+e+n+rL+ eveeLr+ XP_009114236.1 63 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARSKMKQTEMECAYLKRWFGSLTEQNNRLHIEVEELRA 150 9*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.39E-18	48	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	58	118	IPR001356	Homeobox domain
SMART	SM00389	8.9E-15	60	122	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-16	63	116	IPR001356	Homeobox domain
CDD	cd00086	9.27E-15	63	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-17	63	116	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
SMART	SM00340	2.7E-18	118	161	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.6E-9	118	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAILTENSSN LDLTISTPGF SSSPRSDEGS SGEREQLKLD MNRLPSSHED EELSHGGSAP 60 PCKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR PRQIEVWFQN RRARSKMKQT 120 EMECAYLKRW FGSLTEQNNR LHIEVEELRA MKVGSSTMTS TSSLTMCPRC ERVTTAAIPS 180 MAVVDVPAKK LMIPPQEREH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	RRARSKMKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114236.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	1e-162	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455112.1	1e-131	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Refseq	XP_018455149.1	1e-131	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Swissprot	Q8S9N6	1e-113	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A397Y3U3	1e-139	A0A397Y3U3_BRACM; Uncharacterized protein (Fragment)
STRING	fgenesh1_pg.C_scaffold_5000031	1e-117	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	7e-98	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]