PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114239.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 160aa MW: 18541.4 Da PI: 9.7651

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	23	76	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ k XP_009114239.1 23 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARSK 76 66789***********************************************98 PP
2	HD-ZIP_I/II	119.9	1.3e-38	23	110	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++++Lkr++ +l+e+n+rL+ eveeLr+ XP_009114239.1 23 KKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARSKMKQTEMECAYLKRWFGSLTEQNNRLHIEVEELRA 110 9*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.94E-18	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.342	18	78	IPR001356	Homeobox domain
SMART	SM00389	8.9E-15	20	82	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-16	23	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-17	23	76	IPR009057	Homeodomain-like
CDD	cd00086	5.15E-14	23	76	No hit	No description
PROSITE pattern	PS00027	0	53	76	IPR017970	Homeobox, conserved site
SMART	SM00340	2.7E-18	78	121	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.5E-9	78	112	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MNRLPSSHED EELSHGGSAP PCKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR 60 PRQIEVWFQN RRARSKMKQT EMECAYLKRW FGSLTEQNNR LHIEVEELRA MKVGSSTMTS 120 TSSLTMCPRC ERVTTAAIPS MAVVDVPAKK LMIPPQEREH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	78	RRARSKMKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114239.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	1e-126	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455112.1	1e-104	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Refseq	XP_018455149.1	1e-104	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Swissprot	Q8S9N6	1e-87	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	M4DLS0	1e-115	M4DLS0_BRARP; Uncharacterized protein
STRING	Bra017451.1-P	1e-115	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	5e-83	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]